EU member states perform monitoring under the Habitats Directive both within and outside of the Natura 2000 protected areas network to compile data providing information on the conservation status of listed habitats and species at the level of biogeographic regions. These data form an important part of the information to be collated for the 2013 National Report to the EU.

The definition of conservation status in Article 1 of the Directive – in combination with other EU documents (see below) – was used to derive a set of parameters that determine the scope of monitoring activities. The results contribute to the national reports.

In Germany, the responsibility for implementing the monitoring concept falls to the Länder. National government (acting through the Federal Agency for Nature Conservation) is solely responsible for monitoring in the North Sea and Baltic Sea Exclusive Economic Zone. (further information in German). The Federal Agency for Nature Conservation is responsible for data aggregation and the final assessment of conservation status at national level.

Since 2002, national concepts for monitoring and assessment of the conservation status of natural habitats and species of common interest based on surveys of individual occurrences (populations and sites) have been developed by the Federal Agency for Nature Conservation in close cooperation with nature conservation agencies of the German Länder (further information). Methodologies for surveying species of Annex II, IV and V have also been proposed.

In April 2005, the Habitat Committee (committee under Article 20 of the Habitats Directive), acting on recommendation of the European Commission, adopted binding requirements for the compilation, of monitoring data and for the assessment of the conservation status of natural habitats and species of common interest ( DocHab-04-03-03 rev3.doc and Annexes A to F, 5 MB). These documents were slightly modified for the 2007-2012 reporting period with revisions adopted by the Habitat Committee in May 2011. The revised documents are available from the  Habitat Committee Circa workspace. A further document, Assessment and reporting under Article 17 of the Habitats Directive – Reporting Formats for the period 2007-2012, specifies parameters for each of the assessment criteria to determine the favourable conservation status mentioned above and defines an assessment scale.

In a research and development project (R&D project) completed in November 2008, on the basis of EU requirements, the methodology of the overall survey design including monitoring parameters, sample sizes and sample distribution was adapted to the conditions in Germany. The following activities had to be specifically coordinated with the nature conservation agencies of the German Länder:

A comprehensive, nationally uniform monitoring system that meets EU requirements for Habitats Directive monitoring has been developed for the current reporting period (2007-2012) in a R&D project (Conceptual Implementation of EU Requirements for Habitats Directive Monitoring and Reporting Obligations in Germany). In March 2008, the sixteen German Länder approved the following key points of the concept at the 97th session of the German Länder Working Group on Nature Conservation, Landscape Management and Recreation (LANA):

Field methods: cross-national survey methods and census parameters (e.g. occurrence, spawn clumps and callers in the case of amphibians) are determined for all species and habitat types listed in the Annexes of the Habitats Directive. Survey and assessment are based on specific assessment schemes that were modified and operationalized during the R&D project.

Survey intervals: intervals are defined specifically for each species and habitat type, either annually, or every two to three years, or once every six years. For species and habitat types exhibiting large fluctuations (e.g. of population size such as many insects), the interval is shorter than for those with less dynamic fluctuations.

Scope: to limit the effort involved, the survey uses random sampling for common and widespread species and habitat types, while for rare species and habitat types all known localities are sampled (complete survey). Based on statistical considerations, 63 occurrences are used as a threshold value to distinguish between ‘rare’ and ‘frequent’ objects. Species and habitat types with more than 63 known occurrences are randomly sampled at 63 localities. The monitoring survey is conducted both within and outside the Nature 2000 protected area network.

Paired design: The monitoring activities are based on a paired sampling appraoch, meaning the same occurrences are repeatedly sampled. This approach reduces selection effort and increases data accuracy.

Representative allocation of monitoring sites: samples of widespread species and habitat types are allocated to each of the German Länder according to the portion of range or number of known occurrences falling into the territory of the respective Land.

In accordance with a LANA resolution, Annex V species are not included in the national monitoring under the Habitats Directive, but are assessed on the basis of an expert evaluation as in the last National Report.

Existing monitoring programmes can be used for specific species groups and habitat types (for example the monitoring system under the EU Water Framework Directive for Habitats Directive fish species, and German Länder monitoring systems for otter and lynx); in some cases, integration with existing systems is in preparation (for example with the Third National Forest Inventory for selected common forest habitat types).

Data storage and analysis for national activities is performed by the Federal Agency for Nature Conservation.

The Habitats Directive monitoring data on the conservation status of Habitats Directive species and habitat types also serve as the basis for various policy indicators, for example under the National Strategy on Biological Diversity.

Ongoing activities in consultation with the Nature Conservation Agencies of the German Länder: